• Marvin; a collection of Java tools for drawing and displaying chemical structures, substructures and reactions and includes plug-ins to predict physico-chemical characteristics such as pKa, logP and logD.
• JChem Base; a Java tool for the development of applications that allow for the search of mixed chemical structure and non-structural data and can integrate a variety of database systems (Oracle, SQL, Access, etc) with web interfaces. JChem Base also integrates - ChemAxon's other chemistry and drug discovery tools.
• JChem Cartridge for Oracle; to access many JChem functions, such as structure searching or property predictions from within Oracle's SQL
• Screen; virtual screening based on pharmacophore or chemical fingerprints or other descriptors.
• Standardizer; structure canonization tool converting molecules from different formats into standard representational forms.
• Reactor; enumeration of reaction products from reaction equations and reactants.
• Synthesizer; extends Reactor to perform multi-step reactions and explore and specify combinatorial chemistry libraries.
• Fragmenter; generating building blocks based on user defined and default (Recap) rules.
• JKlustor; clustering and diversity calculations based on molecular fingerprints or other properties